PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 170aa    MW: 19502.9 Da    PI: 9.2374
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.41.8e-081782159
        trihelix  1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkm.....rergferspkqCkekwenlnk 59
                    +Wt    l+Li a  ++ ++    +++++++ W++++++       erg +r+++qCk++w+++n 
  XP_013633008.1 17 KWTVTDDLVLISAWLNTSKDPVvgNEQKAGAFWSRIAAYFaasptVERGAKREAIQCKQRWQKMND 82
                    69999999999998766665551166788999******************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0971081IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-61580IPR009057Homeodomain-like
PfamPF138375.1E-71581No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASFCEDSTT ERRERKKWTV TDDLVLISAW LNTSKDPVVG NEQKAGAFWS RIAAYFAASP  60
TVERGAKREA IQCKQRWQKM NDLVCKFCGS YAAATRQKTS GQNEADTVKL AHEIFYNDHK  120
IKFNLHHAWE ELRNDQKWCE VASRKIDGTS KKRKFDDGAQ SESSQATYLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633008.11e-125PREDICTED: glutathione S-transferase T3-like
TrEMBLA0A0D3BXV01e-118A0A0D3BXV0_BRAOL; Uncharacterized protein
STRINGAT3G47680.14e-53(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2225